edtsurf

triangulated mesh surfaces for protein structures
  https://zhanglab.ccmb.med.umich.edu/EDTSurf/
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EDTSurf is a open source program to construct triangulated surfaces for macromolecules. It generates three major macromolecular surfaces: van der Waals surface, solvent-accessible surface and molecular surface (solvent-excluded surface). EDTsurf also identifies cavities which are inside of macromolecules.