Anfo is a mapper in the spirit of soap/maq/bowtie, but its implementation takes more after blast/blat. it's most useful for the alignment of sequencing reads where the dna sequence is somehow modified (think ancient dna or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead).

this package contains the dynamic library for the anfo binaries.