libnhgri-blastall-perl

Perl extension for running and parsing ncbi's blast 2.x
  ftp://ftp.nhgri.nih.gov/pub/software/blastall/
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Nhgri::blastall will enable usage of blast out of a perl script, if blast2 or wu-blast are installed locally. main features are:
* run blast (also via network, which requires blastcl3)
* blast single sequences against each other or against a given library
* format databases
* mask out repetitive dna
* read, parse and filter existing blast reports