libpal-java

Phylogenetic analysis library
  http://www.cebl.auckland.ac.nz/pal-project/
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The pal project is a collaborative effort to provide a high quality java library for use in molecular evolution and phylogenetics. at present pal consists of approximately 200 public classes/interfaces in 16 packages please refer to the api documentation for a detailed description of all classes and methods available, and to the release history for an overview of the development history of pal.