prokka

rapid annotation of prokaryotic genomes
  http://www.vicbioinformatics.com/software.prokka.shtml
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A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files that are ready for editing in Sequin and ultimately submitted to Genbank/DDJB/ENA.