python-csb

Python framework for structural bioinformatics
  https://github.com/csb-toolbox/CSB
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Computational Structural Biology Toolbox (CSB) is a Python class library for reading, storing and analyzing biomolecular structures in a variety of formats with rich support for statistical analyses.

CSB is designed for reusability and extensibility and comes with a clean, well-documented API following good object-oriented engineering practice.