r-bioc-genomicranges

BioConductor representation and manipulation of genomic intervals
  https://bioconductor.org/packages/GenomicRanges/
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The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.