r-other-ascat

Allele-Specific Copy Number Analysis of Tumours
  https://github.com/Crick-CancerGenomics/ascat
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ASCAT (allele-specific copy number analysis of tumors) is a allele- specific copy number analysis of the in vivo breast cancer genome. It can be used to accurately dissect the allele-specific copy number of solid tumors, simultaneously estimating and adjusting for both tumor ploidy and nonaberrant cell admixture.