relion

toolkit for 3D reconstructions in cryo-electron microscopy
  https://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page
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RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy.

RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions, optionally with CUDA/GPU support.

relion provides the serial and parallel (MPI) command-line tools without CUDA/GPU support.