simavr

lean and mean AVR simulator
  https://github.com/buserror/simavr
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A simple command line tool using AVR simulator library to run AVR firmware, produce VCD waveform files and/or run a debugging session. The tool reads simulation parameters directly from the emulated code using .elf section and/or accepts command line arguments.

For more advanced peripheral and virtual circuitry prototyping and simulation see AVR simulator development examples provided by libsimavr-examples package.