slicer

Software package for visualization and image analysis - main application
  http://www.slicer.org/
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Slicer is an application for computer scientists and clinical researchers. the platform provides functionality for segmentation, registration and three-dimensional visualization of multi-modal image data, as well as advanced image analysis algorithms for diffusion tensor imaging, functional magnetic resonance imaging and image-guided therapy. standard image file formats are supported, and the application integrates interface capabilities to biomedical research software and image informatics frameworks.

3d slicer main application.